Rick Flag, director of Metahuman Rehabilitation Agency (MRA) forms the Rehab Squad with Captain Comet as field team leader. In its first mission, the team fails to prevent the theft of the Cardialink at STAR Labs. Meanwhile, Vivian d'Aramis (the Crimson Fox) is captured by her sister Constance, under control of the mysterious Achilles Dahmmon. Captain Comet and his team prevent the kidnapping of the Cardialink creator, then discover Metallo is behind its theft. The team saves Superman after the Cardialink causes the entire planet to emit kryptonite radiation, and Comet removes it. Meanwhile, a few female members are kidnapped by Doctor Psycho, also working for Dahmmon. Rehab Squad members: Cheetah II, Dolphin, Golden Glider, Killer Moth, Mayflower, Starman (Will Payton; joins the team). Villains: Doctor Psycho, Dynamic, Hector Hammond (alias Achilles Dahmmon), Metallo, Ultimate, the Vanquisher, Silver Swan. Guest appearances: Dr. Atley, Caroline Atley, Vivian d'Aramis, Constance d'Aramis (both use the Crimson Fox identity), Dr. Jenet Klyburn, Superman (as Clark Kent). [“Captain Comet's Rehab Squad: Suicide Mission, Prologue, Chapters 1-3”]
Batman rejoins the Outsiders and encourages Robin II to join the Titans, temporarily leaving the problems of Gotham to the GCPD and his new team, the Secret Six. [“Batman: Gotham Knights, Chapter 1”]
While the JLA is in disarray, Maxwell Lord forms his own team called the Conglomerate, and Batman investigates it. After the Conglomerate is introduced at a press conference, the JLA holds its own press conference to introduce the new team, blending old and new members. Nubia becomes Wonder Woman II. Meanwhile, a transformed Despero heads for Earth to get revenge on the team, angering Lobo and alerting Adam Strange. JLA members: Black Canary, Elongated Man (Ralph Dibny), Flash II (joins the team), Green Arrow, Green Lantern (Hal Jordan), Hawkman, Hawkwoman, Martian Manhunter (J'onn J'onzz), Steel (Hank Heywood III), Wonder Woman II (Nubia; joins the team), Zatanna Zatara. Villains: Despero, Maxwell Lord (first appearance). Guest appearances: Alanna (of Rann), Batman, the Conglomerate (Animal Man, the Beetle (Ted Kord of Earth-1, first appearance), Fire (Beatriz daCosta; formerly the Green Flame), Firestorm, Guy Gardner, Ice (Tora Olafsdotter; formerly Icemaiden II), Sargon the Sorcerer), John Constantine, David Cranston (first appearance), Sue Dibny, Dale Gunn, Lois Lane, Lobo, Looker (Lia Briggs), Jimmy Olsen, Andar Pul (of Thanagar), Sardath (of Rann), Adam Strange, Superman, Vicki Vale, Miss Wootenhoffer (first appearance). [“Justice League of America: The Final Chapter”]
The Church of Blood tries to brainwash Dick Grayson. Donna Troy (Wonder Girl), learning Nubia has become the new Wonder Woman, holds a Titans meeting to discuss a mission keeping Doctor Light safe during his extradition to Puerto Verde. There the Titans are attacked by the Children of the Light, while Doctor Light is kidnapped by the Children of the Sun. Roy Harper learns he has a nine-month-old daughter named Lian. Lilith Clay leaves Mount Olympus to stop the Children of the Sun and recruits Changeling and Cyborg, who have learned the missing Mento is in Greece. The Titans also track Doctor Light's transporter signal to Greece. Titans members: Aqualad, Changeling, Cyborg, Donna Troy, Flash II, Hawk, Lilith Clay, Nightwing, Raven, Robin II, Speedy (Roy Harper; becomes Arsenal). Villains: Doctor Light, Cheshire, Children of the Light, Children of the Sun, Confessor, Mother Mayhem. Guest appearances: Azrael, Lian Harper (daughter of Speedy and Cheshire), Mento (Steve Dayton). [“The New Titans: Fragments, Chapters 2-4”]
Writing in the Green Lantern Casebook, Tom Kalmaku recalls the last few months as Green Lantern (Hal Jordan) set up an Earthbound Green Lantern Corps based in Los Angeles, and he worries that Ferris Aircraft may be closing soon. Tom learns from Green Lantern that Guy Gardner has joined the Conglomerate and that Green Lantern will join the Ferris employees after the JLA's press conference. Tom watches the JLA press conference and afterward meets Hal Jordan at Ferris Aircraft, where owner Carl Ferris announces Mr. Smith and Con-Trol now own controlling stock in Ferris Aircrafts, while Carl is kept on to manage the operations. Despite Carl's wanting to fire him, Hal retains his test pilot job at Ferris thanks to Mr. Smith of Con-Trol. [“Green Lantern: The Play's the Thing, Prologue: Con-Trolling Ferris”]
Rick Flag introduces Captain Comet's Rehab Team at a press conference where a statement by Superman attests the team saved his life. Meanwhile, Rip Hunter claims he can go back in time to save everyone who died in the Crisis. After Simon Stagg is kidnapped by the Crimson Fox, the Outsiders investigate. After a brief misunderstanding, the two teams track down the kidnap victims to Achilles Dahmmon, who is revealed to be Hector Hammond when they defeat him. The kidnapped women defeat Doctor Psycho. Stagg forces the Crimson Fox to work for him. Rehab Squad members: Cheetah II, Dolphin, Golden Glider, Hooded Hangman (leaves the team), Killer Moth (supposedly dies), Mayflower, Silver Swan (joins the team), Starman. Villains: Hector Hammond (as Achilles Dahmmon). Guest appearances: Catwoman, Funky Flashman (as Rehab Squad publicist), Cat Grant, Rip Hunter, the Outsiders (Batman, Black Lightning, Geo-Force, Halo, Katana, Looker, Metamorpho), Sapphire Stagg Mason, Simon Stagg, Thorn. [“Captain Comet's Rehab Squad: Suicide Mission, Chapters 4-6”]
Rip Hunter (who is manipulated behind the scenes), Rick Flag, Karin Grace, and Arisia travel back to July 30, 1985, and seemingly rescue Supergirl just before she is killed by the Anti-Monitor, and bring her with them. The middle-aged Rick Flag and Karin Grace regain their youth, while the teenaged Arisia becomes a grown woman. Visiting the future for time machine parts, Karin Grace gains a power suit and a Star-Band. [“Captain Comet's Rehab Squad: The Return of Supergirl, Chapter 1”]
Lilith Clay heals Kole's injuries and recruits her and Jericho. The Flash II tracks down Doctor Light to a Greek island but is captured. Robin II heads back home while the remaining Titans arrive in Greece, rendezvousing with Lilith's recruits, where the team battles the Children of the Sun and Mento. Lilith rejoins the team. Dick Grayson uses Azrael against Brother Blood, exposed as having faked his death, to defeat him and frees Raven. Meanwhile, on Tamaran, Karras – the husband of Koriand'r (Starfire II) – is murdered by an alien alliance that plans to invade Earth, and Koriand'r heads for Earth. Titans members: Aqualad, Arsenal, Changeling, Lilith Clay, Cyborg, Dick Grayson (Nightwing), Flash II, Hawk, Jericho, Kole, Robin II, Starfire II (Koriand'r), Donna Troy. Villains: Brother Blood, Doctor Light, Children of the Sun, Mother Mayhem. Guest appearances: Azrael, Karras (dies), Komand'r, Mento. [“The New Titans: Fragments, Chapters 5-7”]
Ch'p tells Dr. Ub'x how much he misses his girlfriend M'nn'e, who thinks he died because of the effects of the Crisis and married Ch'p's friend D'll instead. The next day, when Ch'p witnesses Dr. Ub'x flying through a vortex, he impulsively jumps through it after him, departing for dimensions unknown. Note: Ch'p does not return to Earth-1 until 1987. [“Tales of the Green Lantern Corps: Ch'p: Monk on a Mission”]
Lana Lang is fired from WGBS. Karin Grace becomes Goldstar. The supposed Supergirl begins draining mystical energy from various mystics. Rehab Squad members: Captain Comet, Dolphin, Rick Flag, Goldstar (Karin Grace), Starman. Villains: Tala (disguised as Supergirl). Guest appearances: Arisia, Felix Faust, Lana Lang, Morgan Edge, Sargon the Sorcerer, Zatanna Zatara. [“Captain Comet's Rehab Squad: The Return of Supergirl, Chapter 2”]
Simon Stagg instructs Crimson Fox to bring down a gang that once tried to abduct his daughter, and she is kidnapped while disguised as Sapphire Stagg Mason. Meanwhile, Jimmy Olsen tracks down the same game in Central City and ends up saving the life of the new hero Argus, and the two are turned into golden statues by Goldface. Metamorpho, Geo-Force, Halo, and Looker of the Outsiders battle the villains Goldface and Rayburn but are defeated and brought to Gorilla City, where they meet the villains' employer, Gorilla Grodd. After Grodd uses an Anti-Green Lantern Corps power ring, Argus escapes, and the heroes battle the villains with the help of Rayburn (a brain-damaged scientist), who explodes in the sky with Grodd in his arms. Back home, Crimson Fox quits Stagg's service. [“Showcase: The Crimson Fox: Working Girl”]
The JLA settles into its Secret Sanctuary. Lobo joins the Conglomerate under the name of General Glory. JLA members: Black Canary, Elongated Man, the Flash II, Green Arrow, Martian Manhunter, Wonder Woman II, Zatanna Zatara. Villains: Despero, Maxwell Lord. Guest appearances: the Conglomerate (Animal Man, the Beetle, Fire, Firestorm, Guy Gardner, Ice, General Glory (Lobo; joins the team), Sargon the Sorcerer), Ettienne (first appearance), Timothy Smythe (first appearance). [“Justice League of America: A New Beginning, Chapters 1-2”]
Batman creates the Secret Six, a temporary new team led by Batwoman (Barbara Gordon), to hunt down Gotham's super-villains who are still on the loose after Resurrection Night. Onyx, Man-Bat, Ragman, Black Orchid, and Plastic Man are the other members. Batwoman fails to capture Signalman and Crazy-Quilt. Man-Bat fails to capture Kite Man but captures Clayface III. Black Orchid travels to northern Sweden to capture Mister Freeze but gives him a second chance to become normal again. Plastic Man as “Eel” O'Brian infiltrates Black Mask's False Face Society of Gotham. Ragman captures Night-Slayer and befriends Dr. Leslie Thompkins. When Captain Stingaree attacks Capt. Mark Compass' ship, Onyx stows away on the villain's ship, and Stingaree forces Mister Freeze to help him. Batwoman is disappointed by the failure to recapture most of the 18 escaped villains so far and learns that the Joker is on the loose again. [“Showcase: The Secret Six: Wanted”]
Superman is reunited with the supposed Supergirl, who is really Tala and wants Tannarak to take Superman's body. After the Rehab Squad battles Tala, Phantom Stranger arrives to reveal that the body Tala has is not Supergirl's body but one he created, and he takes her with him. Later, Lesla-Lar arrives under the delusion of being Supergirl of Earth-Prime. Rehab Squad members: Captain Comet, Dolphin, Golden Glider, Starman. Villains: Tala (disguised as Supergirl). Guest appearances: Lesla-Lar (as Supergirl of Earth-Prime), Phantom Stranger, Superman. [“Captain Comet's Rehab Squad: The Return of Supergirl, Chapter 3”]
A bunch of super-villains celebrate New Year's Eve at a villain bar called the Bar Sinister operated by the bartender Roy Pinto (formerly Electric Man). Those present include Blackrock, Calendar Man, Captain Boomerang, Captain Cold, Doctor Cyber, Electrocutioner II, Heat Wave, Jack of Spades, Javelin, Mammoth, Poison Ivy, the Riddler, Shimmer, Terra-Man, the Trickster, Warp, and Weather Wizard. They watch as Chronos attempts to pull off a crime in New York's Times Square, but he is foiled by the Vigilante II. [“Showcase: Villains: Auld Lang Syne '85”]